SRX2370688
GSM2400387: DNase-seq from limb (ENCLB514OLY); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryo
Cell type
Fetal limbs
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO041UTR
age
59 day
lab
John Stamatoyannopoulos, UW
tissue
limb

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
203414128
Reads aligned (%)
66.9
Duplicates removed (%)
34.1
Number of peaks
47486 (qval < 1E-05)

hg19

Number of total reads
203414128
Reads aligned (%)
66.4
Duplicates removed (%)
34.6
Number of peaks
48606 (qval < 1E-05)

Base call quality data from DBCLS SRA