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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Fetal limbs
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2370687
GSM2400386: DNase-seq from limb (ENCLB188HLU); Homo sapiens; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Embryo
Cell type
Fetal limbs
NA
NA
Attributes by original data submitter
Sample
dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO234CBV
age
58 day
lab
John Stamatoyannopoulos, UW
tissue
limb
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
170730332
Reads aligned (%)
68.2
Duplicates removed (%)
51.2
Number of peaks
22821 (qval < 1E-05)
hg19
Number of total reads
170730332
Reads aligned (%)
67.8
Duplicates removed (%)
51.8
Number of peaks
22608 (qval < 1E-05)
Base call quality data from
DBCLS SRA