Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryo
Cell type
Fetal limbs
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO234CBV
age
58 day
lab
John Stamatoyannopoulos, UW
tissue
limb

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
170730332
Reads aligned (%)
68.2
Duplicates removed (%)
51.2
Number of peaks
22821 (qval < 1E-05)

hg19

Number of total reads
170730332
Reads aligned (%)
67.8
Duplicates removed (%)
51.8
Number of peaks
22608 (qval < 1E-05)

Base call quality data from DBCLS SRA