Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO845WKR

age

37 year

lab

John Stamatoyannopoulos, UW

tissue

testis

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

315301217

Reads aligned (%)

57.2

Duplicates removed (%)

51.8

Number of peaks

11063 (qval < 1E-05)

hg19

Number of total reads

315301217

Reads aligned (%)

56.8

Duplicates removed (%)

52.4

Number of peaks

10169 (qval < 1E-05)