SRX2370671
GSM2400367: DNase-seq from MM.1S (ENCLB793GPI); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
MM.1S
sex
female
sample type
immortalized cell line
donor ID
ENCDO697GBW
age
42 year
health state
immunoglobulin A lambda myeloma
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
315419097
Reads aligned (%)
80.1
Duplicates removed (%)
68.0
Number of peaks
87518 (qval < 1E-05)

hg19

Number of total reads
315419097
Reads aligned (%)
79.7
Duplicates removed (%)
68.9
Number of peaks
89588 (qval < 1E-05)

Base call quality data from DBCLS SRA