SRX2370657
GSM2400355: DNase-seq from KBM-7 (ENCLB484IPH); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
KBM-7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
unknown
cell line
KBM-7
sex
not collected
sample type
immortalized cell line
donor ID
ENCDO763VKT
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
77591990
Reads aligned (%)
72.5
Duplicates removed (%)
7.7
Number of peaks
106516 (qval < 1E-05)

hg19

Number of total reads
77591990
Reads aligned (%)
71.9
Duplicates removed (%)
8.5
Number of peaks
105844 (qval < 1E-05)

Base call quality data from DBCLS SRA