Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

dev stage
adult
cell type
hematopoietic multipotent progenitor cell
treatments
treatment_term_id: UniprotKB:P08700; treatment_term_name: interleukin-3; treatment_type: protein; treatment_term_id: UniprotKB:P21583; treatment_term_name: kit ligand; treatment_type: protein; treatment_term_id: CHEBI:31677; treatment_term_name: hydrocortisone succinate; treatment_type: chemical; treatment_term_id: CHEBI:81579; treatment_term_name: erythropoietin; treatment_type: chemical;
sex
male
sample type
primary cell
donor ID
ENCDO937OUY
age
25 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
558709407
Reads aligned (%)
40.9
Duplicates removed (%)
7.5
Number of peaks
45858 (qval < 1E-05)

hg19

Number of total reads
558709407
Reads aligned (%)
40.2
Duplicates removed (%)
8.3
Number of peaks
41929 (qval < 1E-05)

Base call quality data from DBCLS SRA