Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Dendritic Cells

MeSH Description

ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Sample

dev stage

unknown

cell type

CD1c-positive myeloid dendritic cell

sex

not collected

sample type

primary cell

donor ID

ENCDO820BXZ

age

unknown

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

178552510

Reads aligned (%)

64.9

Duplicates removed (%)

39.6

Number of peaks

22934 (qval < 1E-05)

hg19

Number of total reads

178552510

Reads aligned (%)

64.5

Duplicates removed (%)

39.9

Number of peaks

22941 (qval < 1E-05)