Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

age

5 day

donor ID

ENCDO222AAA

dev stage

embryonic

sample type

in vitro differentiated cells

cell type

hepatocyte

sex

female

health state

healthy

lab

Richard Myers, HAIB

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

308890491

Reads aligned (%)

77.3

Duplicates removed (%)

11.8

Number of peaks

114604 (qval < 1E-05)

hg19

Number of total reads

308890491

Reads aligned (%)

76.9

Duplicates removed (%)

12.6

Number of peaks

113856 (qval < 1E-05)