Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
MRT G401
Tissue
kidney
Lineage
missing
Description
Malignant renal rhabdoid tumor line

Attributes by original data submitter

Sample

age
3 month
donor ID
ENCDO572LRN
dev stage
child
sample type
immortalized cell line
sex
male
cell line
G401
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
245234975
Reads aligned (%)
77.9
Duplicates removed (%)
39.8
Number of peaks
53259 (qval < 1E-05)

hg19

Number of total reads
245234975
Reads aligned (%)
77.5
Duplicates removed (%)
40.7
Number of peaks
52413 (qval < 1E-05)

Base call quality data from DBCLS SRA