SRX2370626
GSM2400308: DNase-seq from ACHN (ENCLB237XJJ); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
ACHN
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

dev stage
adult
cell line
ACHN
sex
male
sample type
immortalized cell line
donor ID
ENCDO627NDO
age
22 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
305434386
Reads aligned (%)
84.6
Duplicates removed (%)
54.2
Number of peaks
110980 (qval < 1E-05)

hg19

Number of total reads
305434386
Reads aligned (%)
84.2
Duplicates removed (%)
54.8
Number of peaks
111818 (qval < 1E-05)

Base call quality data from DBCLS SRA