SRX2370625
GSM2400311: DNase-seq from NCI-H226 (ENCLB438KFJ); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Lung
Cell type
NCI-H226
Primary Tissue
Pleura
Site of Extraction
Ascites
Tissue Diagnosis
Mesothelioma

Attributes by original data submitter

Sample

dev stage
unknown
cell line
NCI-H226
sex
male
sample type
immortalized cell line
donor ID
ENCDO337XRW
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
184278088
Reads aligned (%)
58.6
Duplicates removed (%)
20.2
Number of peaks
168137 (qval < 1E-05)

hg19

Number of total reads
184278088
Reads aligned (%)
58.3
Duplicates removed (%)
20.8
Number of peaks
167441 (qval < 1E-05)

Base call quality data from DBCLS SRA