Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Amniotic stem cells
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
cell type
amniotic stem cell
sex
male
sample type
stem cell
donor ID
ENCDO942PSS
age
15 week
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
281746931
Reads aligned (%)
79.3
Duplicates removed (%)
19.9
Number of peaks
106345 (qval < 1E-05)

hg19

Number of total reads
281746931
Reads aligned (%)
78.5
Duplicates removed (%)
20.8
Number of peaks
108221 (qval < 1E-05)

Base call quality data from DBCLS SRA