Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Thyroid Gland
MeSH Description
A highly vascularized endocrine gland consisting of two lobes joined by a thin band of tissue with one lobe on each side of the TRACHEA. It secretes THYROID HORMONES from the follicular cells and CALCITONIN from the parafollicular cells thereby regulating METABOLISM and CALCIUM level in blood, respectively.

Attributes by original data submitter

Sample

dev stage
adult
sex
male
sample type
tissue
donor ID
ENCDO845WKR
age
37 year
lab
John Stamatoyannopoulos, UW
tissue
thyroid gland

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
209775705
Reads aligned (%)
72.9
Duplicates removed (%)
34.7
Number of peaks
104619 (qval < 1E-05)

hg19

Number of total reads
209775705
Reads aligned (%)
72.7
Duplicates removed (%)
35.3
Number of peaks
104380 (qval < 1E-05)

Base call quality data from DBCLS SRA