SRX2370589
GSM2400275: DNase-seq from left kidney (ENCLB896SWH); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
female
sample type
tissue
donor ID
ENCDO294EUZ
age
59 day
lab
John Stamatoyannopoulos, UW
tissue
left kidney

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
373612137
Reads aligned (%)
77.0
Duplicates removed (%)
20.4
Number of peaks
201978 (qval < 1E-05)

hg19

Number of total reads
373612137
Reads aligned (%)
76.5
Duplicates removed (%)
20.0
Number of peaks
200053 (qval < 1E-05)

Base call quality data from DBCLS SRA