SRX2370584
GSM2400268: DNase-seq from kidney (ENCLB334GBK); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO662IIE
age
80 day
lab
John Stamatoyannopoulos, UW
tissue
kidney

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
154136931
Reads aligned (%)
85.9
Duplicates removed (%)
19.8
Number of peaks
135433 (qval < 1E-05)

hg19

Number of total reads
154136931
Reads aligned (%)
85.5
Duplicates removed (%)
20.2
Number of peaks
134704 (qval < 1E-05)

Base call quality data from DBCLS SRA