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For hg38
BigWig
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: RCC 7860
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2370579
GSM2400263: DNase-seq from RCC 7860 (ENCLB620NUI); Homo sapiens; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Kidney
Cell type
RCC 7860
Tissue
kidney
Description
renal cell adenocarcinmoma
Attributes by original data submitter
Sample
dev stage
adult
cell line
RCC 7860
sex
male
sample type
immortalized cell line
donor ID
ENCDO371AEU
age
58 year
lab
John Stamatoyannopoulos, UW
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
397055885
Reads aligned (%)
79.6
Duplicates removed (%)
65.5
Number of peaks
102630 (qval < 1E-05)
hg19
Number of total reads
397055885
Reads aligned (%)
79.1
Duplicates removed (%)
66.2
Number of peaks
100446 (qval < 1E-05)
Base call quality data from
DBCLS SRA