Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
RCC 7860
Tissue
kidney
Description
renal cell adenocarcinmoma

Attributes by original data submitter

Sample

dev stage
adult
cell line
RCC 7860
sex
male
sample type
immortalized cell line
donor ID
ENCDO371AEU
age
58 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
397055885
Reads aligned (%)
79.6
Duplicates removed (%)
65.5
Number of peaks
102630 (qval < 1E-05)

hg19

Number of total reads
397055885
Reads aligned (%)
79.1
Duplicates removed (%)
66.2
Number of peaks
100446 (qval < 1E-05)

Base call quality data from DBCLS SRA