Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Neural

Cell type

Caudate Nucleus

MeSH Description

Elongated gray mass of the neostriatum located adjacent to the lateral ventricle of the brain.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO317XRR

age

78 year

lab

John Stamatoyannopoulos, UW

tissue

caudate nucleus

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

386719201

Reads aligned (%)

0.8

Duplicates removed (%)

32.2

Number of peaks

435 (qval < 1E-05)

hg19

Number of total reads

386719201

Reads aligned (%)

0.8

Duplicates removed (%)

32.7

Number of peaks

445 (qval < 1E-05)