SRX236118
GSM1082312: Input DNA for LMO2 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Input DNA for LMO2 ChIP-seq
tissue
Hematopoietic
tumor stage
Acute myeloid leukemia
cell line
Kasumi-1 cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46650844
Reads aligned (%)
90.6
Duplicates removed (%)
15.6
Number of peaks
1203 (qval < 1E-05)

hg19

Number of total reads
46650844
Reads aligned (%)
89.9
Duplicates removed (%)
16.7
Number of peaks
1377 (qval < 1E-05)

Base call quality data from DBCLS SRA