Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
Mouse adult hybrid brain
tissue
Adult whole brain
strain
BL6/spretus
chip antibody
PolII-S5p, Abcam ab5131

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
301496879
Reads aligned (%)
69.9
Duplicates removed (%)
11.9
Number of peaks
65965 (qval < 1E-05)

mm9

Number of total reads
301496879
Reads aligned (%)
69.8
Duplicates removed (%)
11.9
Number of peaks
65977 (qval < 1E-05)

Base call quality data from DBCLS SRA