SRX235608
GSM1081542: Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated
cell line
HEK293T RAD21cv

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
161588472
Reads aligned (%)
89.1
Duplicates removed (%)
93.0
Number of peaks
7709 (qval < 1E-05)

hg38

Number of total reads
161588472
Reads aligned (%)
89.6
Duplicates removed (%)
91.7
Number of peaks
6461 (qval < 1E-05)

Base call quality data from DBCLS SRA