Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF1

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human aortic endothelial cell
cell type
HAEC
passage
6 to 10
chip antibody
IRF1, Santa Cruz #sc-497x
treatment
TNFa, 4h

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
21990048
Reads aligned (%)
17.2
Duplicates removed (%)
80.8
Number of peaks
859 (qval < 1E-05)

hg38

Number of total reads
21990048
Reads aligned (%)
18.3
Duplicates removed (%)
79.7
Number of peaks
876 (qval < 1E-05)

Base call quality data from DBCLS SRA