Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LnCaP Bag-1L KO cells plus vector
sample type
LnCaP Bag-1L KO cells plus vector
treatment
10 nM DHT (4 h)
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked cells were lysed using a Sarkosyl-containing lysis buffer. Chromatin was isolated, sheared and subjected to immunoprecipitation with an anti-AR antibody. Libraries were prepared using 5 ng ChIP DNA and the ThruPLEX DNA-seq kit (Rubicon Genomics) according to the manufacturer's instructions.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
54204234
Reads aligned (%)
98.7
Duplicates removed (%)
12.4
Number of peaks
1452 (qval < 1E-05)

hg19

Number of total reads
54204234
Reads aligned (%)
97.8
Duplicates removed (%)
13.9
Number of peaks
1235 (qval < 1E-05)

Base call quality data from DBCLS SRA