Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
sptf-1
Cell type Class
Larvae
Cell type
L1

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_SPTF-1_GFP_L1_rep1_GFP_GTAT
strain
OP196(official name : OP196 genotype : unc119(ed3); wgIs196(sptf1::TY1 EGFP FLAG C; unc119) outcross : 3 transgene : sptf-1 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The SPTF-1::EGFP fusion protein is expressed in the correct sptf-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the SPTF-1 transcription factor. made_by : S Kim )
developmental stage
fed L1
genotype
unc119(ed3);wgIs196(sptf1::TY1 EGFP FLAG C;unc119)
Sex
hermaphrodite
transgene
sptf-1

Metadata from Sequence Read Archive

Library Description


library_name
GSM1076691: Snyder_SPTF-1_GFP_L1_rep1_GFP_GTAT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
8426839
Reads aligned (%)
78.6
Duplicates removed (%)
6.6
Number of peaks
524 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA