SRX235169
GSM1076696: Snyder LIN-35 GFP yA rep2 GFP TGCT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
lin-35

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_LIN-35_GFP_yA_rep2_GFP_TGCT
strain
YL402(official name : YL402 genotype : unc-119(ed3) III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'-UTR genotype : unc-119 (+)] outcross : 0 mutagen : None tags : GFP::3xFlag description : The LIN-35::GFP fusion protein is driven by the pie-1 promoter. made_by : Michelle Kudron in Reinke lab )
developmental stage
Young adult
genotype
unc-119(ed3) III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'-UTR
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM1076696: Snyder_LIN-35_GFP_yA_rep2_GFP_TGCT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
4382589
Reads aligned (%)
61.4
Duplicates removed (%)
24.4
Number of peaks
312 (qval < 1E-05)

ce10

Number of total reads
4382589
Reads aligned (%)
61.4
Duplicates removed (%)
24.4
Number of peaks
314 (qval < 1E-05)

Base call quality data from DBCLS SRA