Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: lin-35
wikigenes
PDBj
CellType: Young adult
ATCC
MeSH
RIKEN BRC
SRX235168
GSM1076695: Snyder LIN-35 GFP yA rep1 GFP TGCT
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
lin-35
Cell type
Cell type Class
Adult
Cell type
Young adult
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_LIN-35_GFP_yA_rep1_GFP_TGCT
strain
YL402(official name : YL402 genotype : unc-119(ed3) III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'-UTR genotype : unc-119 (+)] outcross : 0 mutagen : None tags : GFP::3xFlag description : The LIN-35::GFP fusion protein is driven by the pie-1 promoter. made_by : Michelle Kudron in Reinke lab )
developmental stage
Young adult
genotype
unc-119(ed3) III; vrIs56[pPIE-1::LIN-35::GFP FLAG: LIN-35 3'-UTR
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM1076695: Snyder_LIN-35_GFP_yA_rep1_GFP_TGCT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
2961014
Reads aligned (%)
54.0
Duplicates removed (%)
50.3
Number of peaks
167 (qval < 1E-05)
ce10
Number of total reads
2961014
Reads aligned (%)
54.0
Duplicates removed (%)
50.3
Number of peaks
167 (qval < 1E-05)
Base call quality data from
DBCLS SRA