Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CLOCK

Cell type

Cell type Class
Bone
Cell type
U2OS
Tissue
bone
Lineage
mesoderm
Description
osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

Attributes by original data submitter

Sample

source_name
U2OS
entrainment
confluent, desynchronized
cell line
U2OS
chip antibody
CLOCK

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
21157122
Reads aligned (%)
19.7
Duplicates removed (%)
70.9
Number of peaks
3515 (qval < 1E-05)

hg38

Number of total reads
21157122
Reads aligned (%)
20.6
Duplicates removed (%)
70.0
Number of peaks
3713 (qval < 1E-05)

Base call quality data from DBCLS SRA