SRX235035
GSM1080936: H3K4me3 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
NALM-6
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Nalm6 ALL leukemia cells
cell type
pre-B ALL leukemia cells
culture condition
10% FBS RPMI1640 in 5% CO2, 37°C
antibody vendor/catalog
Abcam, ab8580
ChIP
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
115389150
Reads aligned (%)
98.4
Duplicates removed (%)
35.1
Number of peaks
33190 (qval < 1E-05)

hg19

Number of total reads
115389150
Reads aligned (%)
98.1
Duplicates removed (%)
35.4
Number of peaks
34615 (qval < 1E-05)

Base call quality data from DBCLS SRA