SRX235030
GSM1080931: Ikaros ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IKZF1

Cell type

Cell type Class
Blood
Cell type
NALM-6
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Nalm6 ALL leukemia cells
cell type
pre-B ALL leukemia cells
culture condition
10% FBS RPMI1640 in 5% CO2, 37°C
antibody vendor/catalog
Affinity-purified anti-Ikaros antibody
ChIP
Ikaros

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28201478
Reads aligned (%)
94.4
Duplicates removed (%)
7.2
Number of peaks
8786 (qval < 1E-05)

hg19

Number of total reads
28201478
Reads aligned (%)
93.6
Duplicates removed (%)
8.2
Number of peaks
8689 (qval < 1E-05)

Base call quality data from DBCLS SRA