Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNB1

Cell type

Cell type Class
Blood
Cell type
BL-2
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
BL2 cell line
chip antibody
Lamin B1 (Abcam ab1648)
cell type
Burkitt's lymphoma
immunology
CD3 -, CD10 +, CD13 -, CD19 +, CD20 +, CD34 -, CD37 +, CD38 +, cyCD79a +, CD80 +, CD138 -, HLA-DR +, sm/cyIgG -, sm/cyIgM +, sm/cykappa -, sm/cylambda +

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Lamin B1-DNA complexes were isolated with antibody. Library was prepared using Nextera DNA Library Preparation Kit essentially as described by manufacturer

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
42157223
Reads aligned (%)
193.8
Duplicates removed (%)
1.0
Number of peaks
281 (qval < 1E-05)

hg38

Number of total reads
42157223
Reads aligned (%)
195.7
Duplicates removed (%)
0.5
Number of peaks
402 (qval < 1E-05)

Base call quality data from DBCLS SRA