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For hg38
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: LMNB1
wikigenes
PDBj
CellType: BL-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2349630
GSM2391826: Lamin B1 ChIP-Seq in control cell population replicate 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
LMNB1
Cell type
Cell type Class
Blood
Cell type
BL-2
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type
Attributes by original data submitter
Sample
source_name
BL2 cell line
chip antibody
Lamin B1 (Abcam ab1648)
cell type
Burkitt's lymphoma
immunology
CD3 -, CD10 +, CD13 -, CD19 +, CD20 +, CD34 -, CD37 +, CD38 +, cyCD79a +, CD80 +, CD138 -, HLA-DR +, sm/cyIgG -, sm/cyIgM +, sm/cykappa -, sm/cylambda +
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Lamin B1-DNA complexes were isolated with antibody. Library was prepared using Nextera DNA Library Preparation Kit essentially as described by manufacturer
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
37176837
Reads aligned (%)
98.7
Duplicates removed (%)
0.5
Number of peaks
354 (qval < 1E-05)
hg19
Number of total reads
37176837
Reads aligned (%)
98.1
Duplicates removed (%)
0.9
Number of peaks
266 (qval < 1E-05)
Base call quality data from
DBCLS SRA