Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
nhr-116
Cell type Class
Larvae
Cell type
L4

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_NHR-116_GFP_L4_rep2_GFP_TGCT
strain
OP226(official name : OP226 genotype : unc119(ed3); wgIs226(nhr-116::TY1 EGFP FLAG; unc119) outcross : 3 transgene : nhr-116 tags : Bombard tag : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The NHR-116::EGFP fusion protein is expressed in the correct nhr-116 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-116 transcription factor. made_by : M Sarov )
developmental stage
L4
genotype
unc119(ed3);wgIs226(nhr-116::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite
transgene
nhr-116

Metadata from Sequence Read Archive

Library Description


library_name
GSM1076688: Snyder_NHR-116_GFP_L4_rep2_GFP_TGCT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
8505498
Reads aligned (%)
72.2
Duplicates removed (%)
13.2
Number of peaks
560 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA