Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
CD4+ Th1
strain
C57BL/6
cell type
CD4+ Th1
antibody
CTCF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq assays were performed as previously outlined (Reddy et al. Genome Research 2009, PMID: 19801529) Library construction was performed as previously outlined (Reddy et al. Genome Research 2009, PMID: 19801529)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
79615312
Reads aligned (%)
95.8
Duplicates removed (%)
19.3
Number of peaks
56770 (qval < 1E-05)

mm9

Number of total reads
79615312
Reads aligned (%)
95.7
Duplicates removed (%)
19.2
Number of peaks
56811 (qval < 1E-05)

Base call quality data from DBCLS SRA