SRX233548
GSM1080950: ChIP-seq Perseus Ab overexpressed SF-1 (reps 1-3); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR5A1

Cell type

Cell type Class
Others
Cell type
NCI-H295R
Primary Tissue
Adrenal
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
H295R/TR SF-1 cells
cell line
H295R adrenocortical tumor cell line
sf-1 dosage
overexpressed SF-1
chip antibody
SF-1 (Perseus Proteomics, catalog# PP-N1665-00, lot# A-2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
91936655
Reads aligned (%)
98.9
Duplicates removed (%)
6.0
Number of peaks
2584 (qval < 1E-05)

hg19

Number of total reads
91936655
Reads aligned (%)
98.0
Duplicates removed (%)
7.7
Number of peaks
2038 (qval < 1E-05)

Base call quality data from DBCLS SRA