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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NR5A1
wikigenes
PDBj
CellType: NCI-H295R
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX233547
GSM1080949: ChIP-seq Perseus Ab basal SF-1 (reps 1-3); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NR5A1
Cell type
Cell type Class
Others
Cell type
NCI-H295R
Primary Tissue
Adrenal
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
H295R/TR SF-1 cells
cell line
H295R adrenocortical tumor cell line
sf-1 dosage
basal SF-1
chip antibody
SF-1 (Perseus Proteomics, catalog# PP-N1665-00, lot# A-2)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
88299786
Reads aligned (%)
88.3
Duplicates removed (%)
9.8
Number of peaks
2023 (qval < 1E-05)
hg38
Number of total reads
88299786
Reads aligned (%)
90.8
Duplicates removed (%)
8.1
Number of peaks
2547 (qval < 1E-05)
Base call quality data from
DBCLS SRA