SRX233547
GSM1080949: ChIP-seq Perseus Ab basal SF-1 (reps 1-3); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR5A1

Cell type

Cell type Class
Others
Cell type
NCI-H295R
Primary Tissue
Adrenal
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
H295R/TR SF-1 cells
cell line
H295R adrenocortical tumor cell line
sf-1 dosage
basal SF-1
chip antibody
SF-1 (Perseus Proteomics, catalog# PP-N1665-00, lot# A-2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
88299786
Reads aligned (%)
88.3
Duplicates removed (%)
9.8
Number of peaks
2023 (qval < 1E-05)

hg38

Number of total reads
88299786
Reads aligned (%)
90.8
Duplicates removed (%)
8.1
Number of peaks
2547 (qval < 1E-05)

Base call quality data from DBCLS SRA