SRX233545
GSM1080947: ChIP-seq Millipore Ab basal SF-1 (reps 1-3); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR5A1

Cell type

Cell type Class
Others
Cell type
NCI-H295R
Primary Tissue
Adrenal
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
H295R/TR SF-1 cells
cell line
H295R adrenocortical tumor cell line
sf-1 dosage
basal SF-1
chip antibody
SF-1 (Millipore, catalog# 07-618, lot# JBC1355794)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
64095054
Reads aligned (%)
96.8
Duplicates removed (%)
6.8
Number of peaks
2389 (qval < 1E-05)

hg19

Number of total reads
64095054
Reads aligned (%)
95.9
Duplicates removed (%)
8.6
Number of peaks
2068 (qval < 1E-05)

Base call quality data from DBCLS SRA