Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
lin-35

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_Pges-1_LIN-35_YL398_L1_rep2_GFP_GTAT
strain
YL398(official name : YL398 genotype : unc-119(ed3) III; vrIs55[pGES-1::LIN-35::GFP FLAG: LIN-35 3'-UTR genotype : unc-119 (+)] outcross : 0 mutagen : None tags : GFP::3xFlag description : The LIN-35::GFP fusion protein is driven by the ges-1 promoter and is expressed in the intestine. made_by : Michelle Kudron in Reinke lab )
developmental stage
fed L1
genotype
unc-119(ed3) III; vrIs55[pGES-1::LIN-35::GFP FLAG: LIN-35 3'-UTR
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM1076700: Snyder_Pges-1_LIN-35_YL398_L1_rep2_GFP_GTAT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce10

Number of total reads
2751348
Reads aligned (%)
35.5
Duplicates removed (%)
6.8
Number of peaks
2006 (qval < 1E-05)

ce11

Number of total reads
2751348
Reads aligned (%)
35.5
Duplicates removed (%)
6.8
Number of peaks
2005 (qval < 1E-05)

Base call quality data from DBCLS SRA