Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
dpl-1

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_DPL-1_GFP_L1v2_rep2_GFP_CATT
strain
OP105(official name : OP105 genotype : unc119(ed3); wgIs105(dpl-1::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The DPL-1::EGFP fusion protein has broad expression pattern description : but silence in germline cells. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the DPL-1 transcription factor. made_by : Bob Waterston's lab from UW )
developmental stage
fed L1
genotype
unc119(ed3);wgIs105(dpl-1::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM1076708: Snyder_DPL-1_GFP_L1v2_rep2_GTP_CATT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
9081688
Reads aligned (%)
19.8
Duplicates removed (%)
13.4
Number of peaks
2320 (qval < 1E-05)

ce10

Number of total reads
9081688
Reads aligned (%)
19.8
Duplicates removed (%)
13.4
Number of peaks
2320 (qval < 1E-05)

Base call quality data from DBCLS SRA