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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX2329668
GSM2384791: Input Med26 Cbx3KD NPC; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Cell line_input_Cbx3_siRNA
cell line
V6.5
antibody
none (input)
cell type
ESC-derived NPCs
treatment
Cbx3 siRNA transfection
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% formaldehyde. Cell lysates were obtained from sonicated nuclei and protein-DNA complexes were isolated with indicated antibodies. Libraries were prepared with KAPA LTP kit according to manufacturer's protocol.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18839870
Reads aligned (%)
96.1
Duplicates removed (%)
10.7
Number of peaks
419 (qval < 1E-05)
mm9
Number of total reads
18839870
Reads aligned (%)
95.9
Duplicates removed (%)
10.8
Number of peaks
420 (qval < 1E-05)
Base call quality data from
DBCLS SRA