SRX2321775
GSM2372593: ChiP3 Ab.fastq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells (hESCs)
antibody
NKX2-5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified using a PCR purification kit (QIAGEN) illumina ChIP Seq protocol

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
31022298
Reads aligned (%)
82.2
Duplicates removed (%)
15.1
Number of peaks
6486 (qval < 1E-05)

hg38

Number of total reads
31022298
Reads aligned (%)
84.7
Duplicates removed (%)
13.4
Number of peaks
6824 (qval < 1E-05)

Base call quality data from DBCLS SRA