SRX2321774
GSM2372592: ChiP1 Ab.fastq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells (hESCs)
antibody
NKX2-5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified using a PCR purification kit (QIAGEN) illumina ChIP Seq protocol

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26951025
Reads aligned (%)
98.7
Duplicates removed (%)
43.9
Number of peaks
3341 (qval < 1E-05)

hg19

Number of total reads
26951025
Reads aligned (%)
97.8
Duplicates removed (%)
45.3
Number of peaks
3241 (qval < 1E-05)

Base call quality data from DBCLS SRA