Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Blood
cell type
Resting naive CD4 purified cells
chip antibodies
RNA Polymerase II (Active Motif, 4H8)
biowardrobe ids
881

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was harvested using BioRad total RNA extraction kit with DNaseI treatment. For ChIP cells were fixed with 0.8-1%% formaldehyde for 8 min at RT and DNA was sonicated using Covaris or probe sonicators. RNA libraries for single read sequencing were prepared by using standard Illumina protocols. ChIP libraries were prepared by using ThruPLEX DNA kit (Rubicon).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
29410055
Reads aligned (%)
94.0
Duplicates removed (%)
72.8
Number of peaks
4045 (qval < 1E-05)

hg19

Number of total reads
29410055
Reads aligned (%)
93.2
Duplicates removed (%)
74.0
Number of peaks
4023 (qval < 1E-05)

Base call quality data from DBCLS SRA