SRX228663
GSM1079804: WCE DicerWT R2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1079804
cell type
murine MSC cell line
genotype
Dicer f/f
strain
C57BL/6
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
47210068
Reads aligned (%)
98.2
Duplicates removed (%)
13.4
Number of peaks
650 (qval < 1E-05)

mm9

Number of total reads
47210068
Reads aligned (%)
97.9
Duplicates removed (%)
13.3
Number of peaks
719 (qval < 1E-05)

Base call quality data from DBCLS SRA