Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Bone marrow mononuclear cells
NA
NA

Attributes by original data submitter

Sample

source_name
Fetal bone marrow
cell type
Mononuclear cells from second trimester human fetal bone marrow

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq: Fixed cells were lysed in 1% SDS lysis buffer. Samples were sonicated (~200bp) and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's protocol accompanying the DNA Library Prep Master Mix Set (Part# E6040).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
80858758
Reads aligned (%)
97.5
Duplicates removed (%)
1.4
Number of peaks
1276 (qval < 1E-05)

hg19

Number of total reads
80858758
Reads aligned (%)
96.6
Duplicates removed (%)
1.8
Number of peaks
956 (qval < 1E-05)

Base call quality data from DBCLS SRA