Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KMT2A

Cell type

Cell type Class
Blood
Cell type
Cord blood mononuclear
NA
NA

Attributes by original data submitter

Sample

source_name
Cord blood
cell type
Mononuclear cells from full-term cord blood
chip antibody
MLL1 (Bethyl, A300-086A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq: Fixed cells were lysed in 1% SDS lysis buffer. Samples were sonicated (~200bp) and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's protocol accompanying the DNA Library Prep Master Mix Set (Part# E6040).

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
35738497
Reads aligned (%)
172.4
Duplicates removed (%)
4.8
Number of peaks
24493 (qval < 1E-05)

hg38

Number of total reads
35738497
Reads aligned (%)
174.1
Duplicates removed (%)
4.6
Number of peaks
24650 (qval < 1E-05)

Base call quality data from DBCLS SRA