Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1_1,25(OH)2D3_24hr_PU.1_ChIP
cell line
THP-1
cell type
human monocytic cell line
treated with
100nM VDR ligand 1,25-dihydroxyvitamin D3 (1,25(OH)2D3)
chip antibody
PU.1 (Santa Cruz sc-22805 X)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
28528380
Reads aligned (%)
84.4
Duplicates removed (%)
14.6
Number of peaks
116943 (qval < 1E-05)

hg38

Number of total reads
28528380
Reads aligned (%)
85.4
Duplicates removed (%)
14.0
Number of peaks
117212 (qval < 1E-05)

Base call quality data from DBCLS SRA