Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Lung
Cell type
PC-9
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Adenocarcinoma
cell line
PC9
chip antibody
Brd4
antibody manufacturer
Bethyl
antibody catalog number
A301-985A100
young_id
20160509_4689
tissue
Lung
drug
Erlotinib
concentration
1 uM
cell number
50 million
treatment duration
48h

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
37799999
Reads aligned (%)
95.8
Duplicates removed (%)
12.2
Number of peaks
43612 (qval < 1E-05)

hg19

Number of total reads
37799999
Reads aligned (%)
95.3
Duplicates removed (%)
13.0
Number of peaks
43516 (qval < 1E-05)

Base call quality data from DBCLS SRA