Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Adenocarcinoma
cell line
A549
chip antibody
Brd4
antibody manufacturer
Bethyl
antibody catalog number
A301-985A100
young_id
20160509_4674
tissue
Lung
drug
THZ1 / GSK1120212
concentration
150nM / 200 nM
cell number
50 million
treatment duration
48h

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
31921394
Reads aligned (%)
90.2
Duplicates removed (%)
5.9
Number of peaks
1669 (qval < 1E-05)

hg38

Number of total reads
31921394
Reads aligned (%)
92.0
Duplicates removed (%)
4.8
Number of peaks
1704 (qval < 1E-05)

Base call quality data from DBCLS SRA