SRX2254724
GSM2356778: Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Mesenchymal stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
p53KO_mBMSCs+cFos
antibody
none (input)
passage number
less than 20 passages
cell type
mesenchymal stem cells
genotype
p53KO expressing cFos

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNA was extracted by standard phenol approach. NEB ChIP-seq prep kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63437067
Reads aligned (%)
95.5
Duplicates removed (%)
16.6
Number of peaks
504 (qval < 1E-05)

mm9

Number of total reads
63437067
Reads aligned (%)
95.2
Duplicates removed (%)
16.5
Number of peaks
606 (qval < 1E-05)

Base call quality data from DBCLS SRA