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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TRF2
wikigenes
PDBj
CellType: Myotube
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2254716
GSM2356703: Scramble; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TRF2
Cell type
Cell type Class
Muscle
Cell type
Myotube
NA
NA
Attributes by original data submitter
Sample
source_name
Post-mitotic differentiated muscle cells - MYOTUBES
cell type
Post-mitotic differentiated muscle cells (myotubes)
origin
Muscle biopsy - deltoid
viral transduction
sh Scramble
chip antibody
TRF2 (IMGENEX, monoclonal mouse IMG-124A, clone 4A794.15)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TRF2-DNA complexes were isolated with antibody. Libraries were prepared according to the standards Illumina's instructions
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
75672857
Reads aligned (%)
96.8
Duplicates removed (%)
59.6
Number of peaks
1161 (qval < 1E-05)
hg19
Number of total reads
75672857
Reads aligned (%)
96.0
Duplicates removed (%)
61.2
Number of peaks
1534 (qval < 1E-05)
Base call quality data from
DBCLS SRA