Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
GSU
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Cancer cell line
tumor type
Stomach adenocarcinomas
cell line
GSU
antibody
H3K27ac, Abcam, ab4729
treatment
NA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)

Sequencing Platform

instrument_model
Illumina MiSeq

hg38

Number of total reads
3664859
Reads aligned (%)
99.4
Duplicates removed (%)
3.4
Number of peaks
1981 (qval < 1E-05)

hg19

Number of total reads
3664859
Reads aligned (%)
99.3
Duplicates removed (%)
3.4
Number of peaks
1969 (qval < 1E-05)

Base call quality data from DBCLS SRA