Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: GSU
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2254522
GSM2356648: H3K27ac-GSU; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Digestive tract
Cell type
GSU
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
Cancer cell line
tumor type
Stomach adenocarcinomas
cell line
GSU
antibody
H3K27ac, Abcam, ab4729
treatment
NA
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin-IP Following NEB ChIP-seq library preparation kit (E6200S)
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
3664859
Reads aligned (%)
99.4
Duplicates removed (%)
3.4
Number of peaks
1981 (qval < 1E-05)
hg19
Number of total reads
3664859
Reads aligned (%)
99.3
Duplicates removed (%)
3.4
Number of peaks
1969 (qval < 1E-05)
Base call quality data from
DBCLS SRA